PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g11220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 918aa    MW: 101649 Da    PI: 6.8547
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g11220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.61.6e-20343443199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++  ++++ e++ l+++d +g++W++++++  +++s++yvl+ G     +a +L++gD+v+F++++  +++
  Vang03g11220.1 343 FEKVLSASDAGRIGRLVLPKACAEAYfpSISQSEGVPLRMQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQAMQLRAGDTVTFSRID-PGGK 435
                     99**************************777789999***************9989999999***9.********************987.8998 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     lv++++r+
  Vang03g11220.1 436 LVMGFRRA 443
                     99999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-31339453IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-24341442No hitNo description
SuperFamilySSF1019361.83E-20341442IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-23343444IPR003340B3 DNA binding domain
PfamPF023621.7E-17343443IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138343444IPR003340B3 DNA binding domain
PROSITE profilePS5105014.17605655IPR011124Zinc finger, CW-type
PfamPF074962.2E-10610652IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
LDFVLMGSDI CVVNGSCTHE WRKGWLLRSG GFAQLCCKCG FMEEWKGDIH EPLSAYENSV  60
FCSKFHHQQT GWRECNFCNK PIHCGCMVSR SLFEHLDFGG IGCVSCVNTS QLSTMRNIEN  120
PNGPVSLKKN NSSDRPSRSE GRLFARGVDE GKLMQFCKII EASESSRWNN AQKDGTISRH  180
GHNNQEAKCS FGEGDIGFSN VVKPSVQSLT FATLENNRSP WEIKNIHEAN VQPSLSMYLG  240
NASGKNSVLP SAGEAVEGRL EGKTSPPFHQ GQRSRPIFPK PVKSGLTMNV EIDKGTISQS  300
RVARPPADGR GKNQLLPRYW PRITDQELER LSGDLKSTVV PLFEKVLSAS DAGRIGRLVL  360
PKACAEAYFP SISQSEGVPL RMQDVKGNEW TFQFRFWPNN NSRMYVLEGV TPCIQAMQLR  420
AGDTVTFSRI DPGGKLVMGF RRASNSADTQ ETSTSAQSNS AKGATSAGTE NLPSGSNNAN  480
LLLSMKGNVE TNFNGQREHP LLATGTSGLL ITETNGIMTN NTSLQRKVSV SEKKKTRNIG  540
PKSKRLLIDN EDARELKLTW EEAQDLLRPP PSVKPSIVTI EDQVFEEYDE PPVFGKRTIF  600
STCSSGVKEQ WAQCDDCSKW RKLPVDALLP ANWTCFDNAW DSRRCSCTVP EELSSGELES  660
LLKTDKDFKK RRSDEKSMSI QEHMASGLEA LASAAALGDN LVDTAESSAG ATTKHPRHRP  720
GCSCIVCIQP PSGKGRHKPT CACNVCLTVK RRFKTLMLRK KKRQSEREAE AAQKDQVLPK  780
EESDTNETSR DDATQLEKEV VGLSRSQAEV GESSAAGQID LNSDPNREDM VVDLSAIFFC  840
ESDPTAEHEY MNQNDPRSYT NELQNGENSS LHTPQSNGEG QRHFSDLRSF ASIMWNQERR  900
DEEDSEPNQN QNQNNLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-1634244613120DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1749760KRRFKTLMLRKK
2749762KRRFKTLMLRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518887.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1
RefseqXP_014518889.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1
RefseqXP_014518890.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1
RefseqXP_014518891.10.0PREDICTED: B3 domain-containing transcription repressor VAL1-like isoform X1
TrEMBLA0A0S3S5V70.0A0A0S3S5V7_PHAAN; Uncharacterized protein
STRINGGLYMA11G31234.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2